PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G124800.1
Common NameB456_007G124800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 197aa    MW: 21601.5 Da    PI: 9.8427
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G124800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-054769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++Cp C+++F ++  L  H++ H
  Gorai.007G124800.1 47 FECPFCHRVFANSQALGGHQNAH 69
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.35E-64474No hitNo description
Gene3DG3DSA:3.30.160.602.5E-44573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.514774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MADSSIPARS SSPVKPSSSL KLFGFSLTDQ PDEVLEKAEG FGESRKFECP FCHRVFANSQ  60
ALGGHQNAHK RERQKARRAQ FHSQQRLIAS APVLSSHSLR PTFPRGFTGN AAAKIVSQPF  120
YCPSRPLLLP STPSQYPPRI YVAQPLHFAT AAPALTDFSG QLPEADIGLD LHLKLSPSEI  180
KNVKWDNMTK EASFQD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490357.11e-127PREDICTED: zinc finger protein 6-like
TrEMBLA0A0D2P7W11e-143A0A0D2P7W1_G
STRINGPOPTR_0002s20020.11e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1585447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.11e-12C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]